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Software

IndelCoder

Version 1

Abstract

This program takes a NEXUS file containing aligned DNA sequences and recodes the gaps using the simple indel coding algorithm. It was originally written in Pascal and compiled for Windows.

Associated Publication

Ogden, T.H., and M.S. Rosenberg (2007) How should gaps be treated in parsimony? A comparison of approaches using simulation. Molecular Phylogenetics and Evolution 42(3):817–826.

Github Repository

msrosenberg/IndelCoder

Download Program

Download IndelCoder
Latest release: 1.0.1.1 ()