Peer-reviewed Articles

  1. Gould, E., H.S. Fraser, T.H. Parker, S. Nakagawa, S.C. Griffith, P.A. Vesk, F. Fidler, D.G. Hamilton, R.N. Abbey-Lee, J.K. Abbott, L.A. Aguirre, C. Alcaraz, I. Aloni, D. Altschul, K. Arekar, J.W. Atkins, J. Atkinson, C.M. Baker, M. Barrett, K. Bell, S.K. Bello, I. Beltrán, B.J. Berauer, M.G. Bertram, P.D. Billman, C.K. Blake, S. Blake, L. Bliard, A. Bonisoli-Alquati, T. Bonnet, C.N.M. Bordes, A.P.H. Bose, T. Botterill-James, M.A. Boyd, S.A. Boyle, T. Bradfer-Lawrence, J. Bradham, J.A. Brand, M.I. Brengdahl, M. Bulla, L. Bussière, E. Camerlenghi, S.E. Campbell, L.L.F. Campos, A. Caravaggi, P. Cardoso, C.J.W. Carroll, T.A. Catanach, X. Chen, H.Y.J. Chik, E.S. Choy, A.P. Christie, A. Chuang, A.J. Chunco, B.L. Clark, A. Contina, G.A. Covernton, M.P. Cox, K.A. Cressman, M. Crotti, C.D. Crouch, P.B. D’Amelio, A.A. de Sousa, T.F. Döbert, R. Dobler, A.J. Dobson, T.S. Doherty, S.M. Drobniak, A.G. Duffy, A.B. Duncan, R.P. Dunn, J. Dunning, T. Dutta, L. Eberhart-Hertel, J.A. Elmore, M.M. Elsherif, H.M. English, D.C. Ensminger, U.R. Ernst, S.M. Ferguson, E. Fernandez-Juricic, T. Ferreira-Arruda, J. Fieberg, E.A. Finch, E.A. Fiorenza, D.N. Fisher, A. Fontaine, W. Forstmeier, Y. Fourcade, G.S. Frank, C.A. Freund, E. Fuentes-Lillo, S.L. Gandy, D.G. Gannon, A.I. García-Cervigón, A.C. Garretson, X. Ge, W.L. Geary, C. Géron, M. Gilles, A. Girndt, D. Gliksman, H.B. Goldspiel, D.G.E. Gomes, M.K. Good, S.C. Goslee, J.S. Gosnell, E.M. Grames, P. Gratton, N.M. Grebe, S.M. Greenler, M. Griffioen, D.M. Griffith, F.J. Griffith, J.J. Grossman, A. Güncan, S. Haesen, J.G. Hagan, H.A. Hager, J.P. Harris, N.D. Harrison, S.S. Hasnain, J.C. Havird, A.J. Heaton, M.L. Herrera-Chaustre, T.J. Howard, B.-Y. Hsu, F. Iannarilli, E.C. Iranzo, E.N.K. Iverson, S.O. Jimoh, D.H. Johnson, M. Johnsson, J. Jorna, T. Jucker, M. Jung, I. Kačergytė, O. Kaltz, A. Ke, C.D. Kelly, K. Keogan, F.W. Keppeler, A.K. Killion, D. Kim, D.P. Kochan, P. Korsten, S. Kothari, J. Kuppler, J.M. Kusch, M. Lagisz, K.M. Lalla, D.J. Larkin, C.L. Larson, K.S. Lauck, M.E. Lauterbur, A. Law, D.-J. Léandri-Breton, J.J. Lembrechts, K. L’Herpiniere, E.J.P. Lievens, D.O.d. Lima, S. Lindsay, M. Luquet, R. MacLeod, K.H. Macphie, K. Magellan, M.M. Mair, L.E. Malm, S. Mammola, C.P. Mandeville, M. Manhart, L.M. Manrique-Garzon, E. Mäntylä, P. Marchand, B.M. Marshall, C.A. Martin, D.A. Martin, J.M. Martin, A.R. Martinig, E.S. McCallum, M. McCauley, S.M. McNew, S.J. Meiners, T. Merkling, M. Michelangeli, M. Moiron, B. Moreira, J. Mortensen, B. Mos, T.O. Muraina, P.W. Murphy, L. Nelli, P. Niemelä, J. Nightingale, G. Nilsonne, S. Nolazco, S.S. Nooten, J.L. Novotny, A.B. Olin, C.L. Organ, K.L. Ostevik, F.X. Palacio, M. Paquet, D.J. Parker, D.J. Pascall, V.J. Pasquarella, J.H. Paterson, A. Payo-Payo, K.M. Pedersen, G. Perez, K.I. Perry, P. Pottier, M.J. Proulx, R. Proulx, J.L. Pruett, V. Ramananjato, F.T. Randimbiarison, O.H. Razafindratsima, D.J. Rennison, F. Riva, S. Riyahi, M.J. Roast, F.P. Rocha, D.G. Roche, C. Román-Palacios, M.S. Rosenberg, J. Ross, F.E. Rowland, D. Rugemalila, A.L. Russell, S. Ruuskanen, P. Saccone, A. Sadeh, S.M. Salazar, K. Sales, P. Salmón, A. Sánchez-Tójar, L.P. Santos, F. Santostefano, H.T. Schilling, M. Schmidt, T. Schmoll, A.C. Schneider, A.E. Schrock, J. Schroeder, N. Schtickzelle, N.L. Schultz, D.A. Scott, M.P. Scroggie, J.T. Shapiro, N. Sharma, C.L. Shearer, D. Simón, M.I. Sitvarin, F.L. Skupien, H.L. Slinn, G.P. Smith, J.A. Smith, R. Sollmann, K. Stack Whitney, S.M. Still, E.F. Stuber, G.F. Sutton, B. Swallow, C.C. Taff, E. Takola, A.J. Tanentzap, R. Tarjuelo, R.J. Telford, C.J. Thawley, H. Thierry, J. Thomson, S. Tidau, E.M. Tompkins, C.M. Tortorelli, A. Trlica, B.R. Turnell, L. Urban, S. Van de Vondel, J.E.M. van der Wal, J. Van Eeckhoven, F. van Oordt, K.M. Vanderwel, M.C. Vanderwel, K.J. Vanderwolf, J. Vélez, D.C. Vergara-Florez, B.C. Verrelli, M.V. Vieira, N. Villamil, V. Vitali, J. Vollering, J. Walker, X.J. Walker, J.A. Walter, P. Waryszak, R.J. Weaver, R.E.M. Wedegärtner, D.L. Weller, S. Whelan, R.L. White, D.W. Wolfson, A. Wood, S.W. Yanco, J.D.L. Yen, C. Youngflesh, G. Zilio, C. Zimmer, G.M. Zimmerman, and R.A. Zitomer (2025) Same data, different analysts: Variation in effect sizes due to analytical decisions in ecology and evolutionary biology. BMC Biology 23:35. [36 pages]
  2. Odhano, S., M.S. Rosenberg, N.U. Saher, G.Y. Zhang, and M. Kamal (2025) Comparative biochemical and genetic analysis of two species of ghost crabs, Ocypode rotundata and Ocypode ceratophthalmus from the coast of Pakistan. Pakistan Journal of Zoology 57(1):117–131.
  3. Johnson, M.T.J., I. Arif, F. Marchetti, J. Munshi-South, R.W. Ness, M. Szulkin, B.C. Verrelli, C.L. Yauk, D.N. Anstett, W. Booth, A.E. Caizergues, E.J. Carlen, A. Dant, J. González, C. González Lagos, M. Oman, M. Phifer-Rixey, D.J. Rennison, M.S. Rosenberg, K.M. Winchell (2024) Effects of urban-induced mutations on ecology, evolution and health. Nature Ecology & Evolution 8(6):1074–1086.
  4. Miles, L.S., H. Waterman, N.A. Ayoub, J.E. Garb, R.A. Haney, M.S. Rosenberg, T.J. Krabbenhoft, B.C. Verrelli (2024) Insight into the adaptive role of arachnid genome-wide duplication through chromosome-level genome assembly of the Western black widow spider. Journal of Heredity 115(3):241–252.
  5. Rosenberg, M.S. (2024) MetaWin 3: Open-source software for meta-analysis. Frontiers in Bioinformatics 4:1305969. [5 pages]
  6. Odhano, S., N.U. Saher, M.S. Rosenberg, M.F. Hassan, and H. Soomro (2022) Burrow construction morphology of Ocypode rotundata Miers 1882 (Ocypodidae: Brachyura) from the sandy coastal areas of Karachi, Pakistan. Oceanography & Fisheries Open Access Journal 15(4):555917. [10 pages]
  7. Odhano, S., N.U. Saher, M.S. Rosenberg, and M. Kamal (2022) SDS-PAGE electrophoresis of Ocypode rotundata Miers, 1882 and O. ceratophthalma Pallas, 1772 using muscle tissue along the coast of Pakistan. Oceanography & Fisheries Open Access Journal 15(3):555911. [7 pages]
  8. Vågene, Å.J., T.P. Honap, K.M. Harkins, M.S. Rosenberg, K. Giffin, F. Cárdenas-Arroyo, L.P. Leguizamón, J. Arnett, J.E. Buikstra, A. Herbig, J. Krause, A.C. Stone, and K.I. Bos (2022) Geographically dispersed zoonotic tuberculosis in pre-contact South American human populations. Nature Communications 13:1195. [12 pages]
  9. Castillo, A.I., B. Roos, M.S. Rosenberg, R. Cartwright, and M.A. Wilson (2022) Genie: An interactive real-time simulation for teaching genetic drift. Evolution: Education and Outreach 15:3. [13 pages]
  10. Stover, D.A., G. Housman, A.C. Stone, M.S. Rosenberg, and B.C. Verrelli (2022) Evolutionary genetic signatures of selection on bone-related variation within human and chimpanzee populations. Genes 13(2):183. [19 pages]
  11. Rivera, J.A., H.N. Rich‡, A.M. Lawling, M.S. Rosenberg, and E.P. Martins (2021) Occurrence data uncover patterns of allopatric divergence and interspecies interactions in the evolutionary history of Sceloporus lizards. Ecology and Evolution 11(6):2796–2813.
  12. Tassone, E.E., L.S. Miles, R.J. Dyer, M.S. Rosenberg, R.M. Cowling, and B.C. Verrelli (2021) Evolutionary stability, landscape heterogeneity, and human land-usage shape population genetic connectivity in the Cape Floristic Region biodiversity hotspot. Evolutionary Applications 14(4):1109–1123.
  13. Rosenberg, M.S. (2020) A fresh look at the biodiversity lexicon for fiddler crabs (Decapoda: Brachyura: Ocypodidae). Part 2: Biogeography. Journal of Crustacean Biology 40(4):364–383.
  14. Rosenberg, M.S. (2019) A fresh look at the biodiversity lexicon for fiddler crabs (Decapoda: Brachyura: Ocypodidae). Part 1: Taxonomy. Journal of Crustacean Biology 39(6):729–738.
  15. Rosenberg, M.S. (2018) New record and range extension of the fiddler crab Uca princeps (Smith, 1870) from California, USA. Journal of Crustacean Biology 38(6):823–824.
  16. Luque, J., J.H. Christy, A.J.W. Hendy, M.S. Rosenberg, R.W. Portell, K.A. Kerr, and A.R. Palmer (2018) Quaternary intertidal and supratidal crabs (Decapoda, Brachyura) from tropical America and the systematic affinities of fossil fiddler crabs. Journal of Systematic Paleontology 16(12):1037–1055.
  17. Honap, T.P.‡, L.-A. Pfister, G. Housman, S. Mills, R.P. Tarara, K. Suzuki, F.P. Cuozzo, M.L. Sauther, M.S. Rosenberg, and A.C. Stone (2018) Mycobacterium leprae genomes from naturally infected nonhuman primates. PLoS Neglected Tropical Diseases 12(1):e0006190. [17 pages]
  18. Stoltzfus, A., M.S. Rosenberg, H. Lapp, A. Budd, K. Cranston, E. Pontelli, S. Oliver, and R.A. Vos (2017) Community and code: Nine lessons from nine NESCent hackathons. F1000Research 6:786. [15 pages]
  19. Dowling, T.E., C.D. Anderson, P.C. Marsh, and M.S. Rosenberg (2015) Population structure in the roundtail chub (Gila robusta complex) of the Gila River basin as determined by microsatellites: evolutionary and conservation implications. PLoS ONE 10(10):e0139832. [21 pages]
  20. Rosenberg, M.S. (2014) Contextual cross-referencing of species names for fiddler crabs (genus Uca): An experiment in cyber-taxonomy. PLoS ONE 9(7):e101704. [10 pages]
  21. Rosenberg, M.S. (2013) The nomenclatural status of the two “spiny-wristed” fiddler crabs: Uca spinicarpa Rathbun, 1900, and U. hesperiae Crane, 1975 (Crustacea: Brachyura: Ocypodidae). Zootaxa 3716(3):494–500.
  22. Stoltzfus, A., H. Lapp, N. Matasci, H. Deus, B. Sidlauskas, C.M. Zmasek, G. Vaidya, E. Pontelli, K. Cranston, R. Vos, C.O. Webb, L.J. Harmon, M. Pirrung, B. O'Meara, M.W. Pennell, S. Mirarab, M.S. Rosenberg, J.P. Balhoff, H.M. Bik, T. Heath, P. Midford, J.W. Brown, E.J. McTavish, J. Sukumaran, M. Westneat, M.E. Alfaro, A. Steele, and G. Jordan (2013) Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient. BMC Bioinformatics 14:158. [17 pages]
  23. Perez, D.M., M.S. Rosenberg, and M.R. Pie (2012) The evolution of waving displays in fiddler crabs (Uca spp., Crustacea: Ocypodidae). Biological Journal of the Linnean Society 106(2):307–315.
  24. Rosenberg, M.S., and C.D. Anderson† (2011) PASSaGE. Pattern Analysis, Spatial Statistics and Geographic Exegesis. Version 2. Methods in Ecology and Evolution 2(3):229–232.
  25. Chen, S.-C., M.S. Rosenberg, and B.G. Lindsay (2011) MixtureTree: A program for constructing phylogeny. BMC Bioinformatics 12:111. [3 pages]
  26. Anderson, C.D.†, and M.S. Rosenberg (2011) Variation in association with manmade habitat edges exhibited by the Timber Rattlesnake (Crotalus horridus) in St. Louis County, Missouri. Journal of Herpetology 45(1):50–55.
  27. Manel, S., S. Joost, B.K. Epperson, R. Holderegger, A. Storfer, M.S. Rosenberg, K.T. Scribner, A. Bonin, and M.-J. Fortin (2010) Perspectives on the use of landscape genetics to detect genetic adaptive variation in the field. Molecular Ecology 19(17):3760–3772.
  28. Anderson, C.D.†, B.K. Epperson, M.-J. Fortin, R. Holderegger, P.M.A. James, M.S. Rosenberg, K.T. Scribner, and S. Spear (2010) Considering spatial and temporal scale in landscape-genetic studies of gene flow. Molecular Ecology 19(17):3565–3575.
  29. Epperson, B.K., B.H. McRae, K.T. Scribner, S.A. Cushman, M.S. Rosenberg, M.-J. Fortin, P.M.A. James, M. Murphy, S. Manel, P. Legendre, and M.R.T. Dale (2010) Utility of computer simulations in landscape genetics. Molecular Ecology 19(17):3549–3564.
  30. Rosenberg, M.S. (2010) A generalized formula for converting chi-square tests to effect sizes for meta-analysis. PLoS ONE 5(4):e10059. [3 pages]
  31. Pearson, D.L., C.D. Anderson†, B.R. Mitchell, M.S. Rosenberg, R. Navarette, and P. Coopmans (2010) Testing hypotheses of bird extinctions at Rio Palenque, Ecuador, with informal species lists. Conservation Biology 24(2):500–510.
  32. Niehuis, O., J.D. Gibson, M.S. Rosenberg, B. Pannebakker, T. Koevoets, A.K. Judson, C.A. Desjardins, K. Kennedy, D. Duggan, L.W. Beukeboom, L. van de Zande, D.M. Shuker, J.H. Werren, and J. Gadau (2010) Recombination and its impact on the genome of the haplodiploid parasitoid wasp Nasonia. PLoS ONE 5(1):e8597. [13 pages]
  33. Ogden, T.H.†, and M.S. Rosenberg (2007) Alignment and topological accuracy of the direct optimization approach via POY and traditional phylogenetics via ClustalW + PAUP*. Systematic Biology 56(2):182–193.
  34. Ogden, T.H.†, and M.S. Rosenberg (2007) How should gaps be treated in parsimony? A comparison of approaches using simulation. Molecular Phylogenetics and Evolution 42(3):817–826. [Erratum: 2008, 46(2):807-808.]
  35. Ogden, T.H.†, and M.S. Rosenberg (2006) Multiple sequence alignment accuracy and phylogenetic inference. Systematic Biology 55(2):314–328.
  36. Rosenberg, M.S. (2005) Multiple sequence alignment accuracy and evolutionary distance estimation. BMC Bioinformatics 6:278. [10 pages]
  37. Rosenberg, M.S. (2005) MySSP: Non-stationary evolutionary sequence simulation, including indels. Evolutionary Bioinformatics Online 1:81–83.
  38. Rosenberg, M.S. (2005) Evolutionary distance estimation and fidelity of pair wise sequence alignment. BMC Bioinformatics 6:102. [9 pages]
  39. Rosenberg, M.S. (2005) The file-drawer problem revisited: A general weighted method for calculating fail-safe numbers in meta-analysis. Evolution 59(2):464–468.
  40. Gadagkar, S.R., M.S. Rosenberg, and S. Kumar (2005) Inferring species phylogenies from multiple genes: Concatenated sequence tree versus consensus gene tree. Journal of Experimental Zoology. B. Molecular and Developmental Evolution 304(1):64–74.
  41. Rosenberg, M.S., K.A. Garrett, Z. Su, and R.L. Bowden (2004) Meta-analysis in plant pathology: Synthesizing research results. Phytopathology 94(9):1013–1017.
  42. Rosenberg, M.S. (2004) Wavelet analysis for detecting anisotropy in point patterns. Journal of Vegetation Science 15(2):277–284.
  43. Sokal, R.R., N.L. Oden, M.S. Rosenberg, and B.A. Thomson (2004) A new protocol for evaluating putative causes for multiple variables in a spatial setting, illustrated by its application to European cancer rates. American Journal of Human Biology 16(1):1–16.
  44. Hyatt, L.A., M.S. Rosenberg, T.G. Howard, G. Bole, W. Fang, J. Anastasia, K. Brown, R. Grella, K. Hinman, J.P. Kurdziel, and J. Gurevitch (2003) The distance dependence prediction of the Janzen-Connell hypothesis: A meta-analysis. Oikos 103(3):590–602.
  45. Rosenberg, M.S., S. Subramanian, and S. Kumar (2003) Patterns of transitional mutation biases within and among mammalian genomes. Molecular Biology and Evolution 20(6):988–993.
  46. Rosenberg, M.S., and S. Kumar (2003) Heterogeneity of nucleotide frequencies among evolutionary lineages and phylogenetic inference. Molecular Biology and Evolution 20(4):610–621.
  47. Rosenberg, M.S., and S. Kumar (2003) Taxon sampling, bioinformatics, and phylogenomics. Systematic Biology 52(1):119–124.
  48. Dungan, J.L., J.N. Perry, M.R.T. Dale, P. Legendre, S. Citron-Pousty, M.-J. Fortin, A. Jakomulska, M.N. Miriti, and M.S. Rosenberg (2002) A balanced view of scaling in spatial statistical analysis. Ecography 25(5):626–640.
  49. Perry, J.N., A.M. Liebhold, M.S. Rosenberg, J.L. Dungan, M.N. Miriti, A. Jakomulska, and S. Citron-Pousty (2002) Illustration and guidelines for selecting statistical methods for quantifying spatial patterns in ecological data. Ecography 25(5):578–600.
  50. Dale, M.R.T., P.M. Dixon, M.-J. Fortin, P. Legendre, D.E. Myers, and M.S. Rosenberg (2002) Conceptual and mathematical relationships among methods for spatial analysis. Ecography 25(5):558–577.
  51. Rosenberg, M.S. (2002) Fiddler crab claw shape variation: A geometric morphometric analysis across the genus Uca. Biological Journal of the Linnean Society 75(2):147–162.
  52. Rosenberg, M.S., and S. Kumar (2001) Incomplete taxon sampling is not a problem for phylogenetic inference. Proceedings of the National Academy of Sciences USA 98(19):10751–10756.
  53. Rosenberg, M.S., and S. Kumar (2001) Traditional phylogenetic reconstruction methods reconstruct shallow and deep evolutionary relationships equally well. Molecular Biology and Evolution 18(9):1823–1827.
  54. Rosenberg, M.S. (2001) The systematics and taxonomy of fiddler crabs: A phylogeny of the genus Uca. Journal of Crustacean Biology 21(3):839–869.
  55. Rosenberg, M.S. (2000) The bearing correlogram: A new method of analyzing directional spatial autocorrelation. Geographical Analysis 32(3):267–278.
  56. Sokal, R.R., N.L. Oden, M.S. Rosenberg, and B.A. Thomson (2000) Cancer incidences in Europe related to mortalities, and ethnohistoric, genetic, and geographic distances. Proceedings of the National Academy of Sciences USA 97(11):6067–6072.
  57. Rosenberg, M.S., R.R. Sokal, N.L. Oden, and D. DiGiovanni (1999) Spatial autocorrelation of cancer in Western Europe. European Journal of Epidemiology 15(1):15–22.
  58. Adams, D.C., and M.S. Rosenberg (1998) Partial warps, phylogeny, and ontogeny: A comment on Fink and Zelditch (1995). Systematic Biology 47(1):168–173.
  59. Sokal, R.R., N.L. Oden, M.S. Rosenberg, and D. DiGiovanni (1997) Ethnohistory, genetics, and cancer mortality in Europeans. Proceedings of the National Academy of Sciences USA 94(23):12728–12731.
  60. Sokal, R.R., N.L. Oden, M.S. Rosenberg, and D. DiGiovanni (1997) The patterns of historical population movements in Europe and some of their genetic consequences. American Journal of Human Biology 9(3):391–404.
  61. Adams, D.C., J. Gurevitch, and M.S. Rosenberg (1997) Resampling tests for meta-analysis of ecological data. Ecology 78(4):1277–1283.
  62. Rosenberg, M.S. (1997) Evolution of shape differences between the major and minor chelipeds of Uca pugnax (Decapoda: Ocypodidae). Journal of Crustacean Biology 17(1):52–59.

Edited Books

  1. Rosenberg, M.S. (2009) Sequence Alignment: Methods, Models, Concepts, and Strategies. University of California Press: Berkeley, CA.

Book Chapters (Peer-reviewed)

  1. Rosenberg, M.S., and C.D. Anderson (2016) Spatial Pattern Analysis. In Oxford Bibliographies in Ecology, D. Gibson, ed. Oxford University Press: New York. [18 pages]
  2. Lajeunesse, M.J., M.S. Rosenberg, and M.D. Jennions (2013) Phylogenetically independent meta-analysis. Pp. 284–299 in Handbook of Meta-analysis in Ecology and Evolution, J. Koricheva, J. Gurevitch and K.L. Mengersen, eds. Princeton University Press: Princeton, NJ.
  3. Jennions, M.D., C.J. Lortie, M.S. Rosenberg, and H.R. Rothstein (2013) Publication and related biases. Pp. 207–236 in Handbook of Meta-analysis in Ecology and Evolution, J. Koricheva, J. Gurevitch and K.L. Mengersen, eds. Princeton University Press: Princeton, NJ.
  4. Rosenberg, M.S. (2013) Moment and least-squares based approaches to meta-analytic inference. Pp. 108–124 in Handbook of Meta-analysis in Ecology and Evolution, J. Koricheva, J. Gurevitch and K.L. Mengersen, eds. Princeton University Press: Princeton, NJ.
  5. Rosenberg, M.S., H.R. Rothstein, and J. Gurevitch (2013) Effect sizes: Conventional choices and calculations. Pp. 61–71 in Handbook of Meta-analysis in Ecology and Evolution, J. Koricheva, J. Gurevitch and K.L. Mengersen, eds. Princeton University Press: Princeton, NJ.
  6. Chen, S.-C., M. Li, M.S. Rosenberg, and B.G. Lindsay (2011) Mixture tree construction and its applications. Pp. 135–147 in Handbook of Statistical Bioinformatics, H.H.-S. Lu, B. Schölkopf and H. Zhao, eds. Springer-Verlag: Berlin.
  7. Rosenberg, M.S., and T.H. Ogden† (2009) Simulation approaches to evaluating alignment error and methods for comparing alternate alignments. Pp. 179–207 in Sequence Alignment: Methods, Models, Concepts, and Strategies, M.S. Rosenberg, ed. University of California Press: Berkeley, CA.
  8. Rosenberg, M.S. (2009) Sequence alignment: Concepts and history. Pp. 1–22 in Sequence Alignment: Methods, Models, Concepts, and Strategies, M.S. Rosenberg, ed. University of California Press: Berkeley, CA.

Software

  1. Rosenberg, M.S. (2022) MetaWin. Version 3.
  2. Rosenberg, M.S. (2021) PySSaGE. beta version.
  3. Rosenberg, M.S. (2019) Phy2HTML. Version 1.
  4. Rosenberg, M.S. (2013) Impact Factor Calculator. Version 1.
  5. Rosenberg, M.S., and C.D. Anderson† (2011) PASSaGE. Pattern Analysis, Spatial Statistics and Geographic Exegesis. Version 2.
  6. Rosenberg, M.S. (2010) IndelCoder. Version 1.
  7. Rosenberg, M.S. (2005) Fail-Safe Number Calculator. Version 1.
  8. Rosenberg, M.S. (2005) MySSP: Non-stationary evolutionary sequence simulation, including indels. Version 1.
  9. Rosenberg, M.S. (2001) PASSAGE. Pattern Analysis, Spatial Statistics and Geographic Exegesis. Version 1.
  10. Rosenberg, M.S., D.C. Adams, and J. Gurevitch (2000) MetaWin: Statistical Software for Meta-Analysis. Version 2. Sinauer Associates: Sunderland, MA.
  11. Rosenberg, M.S., D.C. Adams, and J. Gurevitch (1997) MetaWin: Statistical Software for Meta-Analysis with Resampling Tests. Version 1. Sinauer Associates: Sunderland, MA.

Reports

  1. Dowling, T.E., P.C. Marsh, C.D. Anderson†, M.S. Rosenberg, and A.T. Kelsen (2008) Population structure in the roundtail chub (Gila robusta complex) of the Gila River basin as determined by microsatellites. Arizona Game and Fish Department: Phoenix, AZ.

Miscellaneous Publications

  1. Rosenberg, M.S. (2014) A biologist's guide to impact factors. PeerJ Preprints 2:e477v1.
  2. Ainsworth, E.A., M.S. Rosenberg, and X. Wang (2007) Meta-analysis: The past, present and future. New Phytologist 176(4):742–745.
  3. Rosenberg, M.S. (2005) Why lectures seem to last forever. Journal of Irreproducible Results 49(3):16.

Book/Software Reviews

  1. Rosenberg, M.S. (2015) (Book Review) Handbook of Spatial Point-Pattern Analysis in Ecology. International Journal of Geographical Information Science 29(9):1718–1719.
  2. Rosenberg, M.S. (1998) (Book Review) Modeling Dynamic Biological Systems. Quarterly Review of Biology 73(3):340.
  3. Rosenberg, M.S. (1997) (Software Review) Minitab for Windows. Quarterly Review of Biology 72(2):240–241.

Dissertation

  1. Rosenberg, M.S. (2000) The Comparative Claw Morphology, Phylogeny, and Behavior of Fiddler Crabs (Genus Uca) (doctoral dissertation). Ecology and Evolution, State University of New York at Stony Brook, Stony Brook, NY.

Abstracts

  1. Odhano, S., N.U. Saher, M.S. Rosenberg, and M. Kamal (2018) Species re-description of genus Ocypode (family: Ocypodidae) through biochemical and genetic analysis along the coast of Pakistan. Proceedings of Pakistan Congress of Zoology 38:416.
  2. Honap, T.P., A.J. Vagene, A. Herbig, M.S. Rosenberg, J.E. Buikstra, K.I. Bos, J. Krause, and A.C. Stone (2018) Pre-contact and historic era Mycobacterium tuberculosis complex genomes from the Americas. American Journal of Physical Anthropology 165(S66):125.
  3. Honap, T.P.‡, Å. Vågene, A. Herbig, M.S. Rosenberg, J.E. Buikstra, K.I. Bos, J. Krause, and A.C. Stone (2016) Genetic analyses of pre- and post-contact North American Mycobacterium tuberculosis complex strains. American Journal of Physical Anthropology 159(S62):177.
  4. Luque, J., A.J.W. Hendy, M.S. Rosenberg, R.W. Portell, and A.R. Palmer (2015) Cenozoic inter-tidal, supra-tidal, and freshwater crabs from tropical America. GSA Abstracts with Programs 47(7):423.
  5. Pfister, L.-A., L.T. Nash, M.S. Rosenberg, and A.C. Stone (2009) Influence of androgen receptor variation in primate and carnivore female social dominance. American Journal of Physical Anthropology 138(S48):210.
  6. Pfister, L.-A., M.S. Rosenberg, and A.C. Stone (2008) Full genome comparisons of Mycobacterium: Insight into the origin of tuberculosis and leprosy. American Journal of Physical Anthropology 135(S46):171.
  7. Sokal, R.R., N.L. Oden, M.S. Rosenberg, and B.A. Thomson (2000) Cancer incidences in Europe related to ethnohistoric and genetic distances. American Journal of Physical Anthropology 111(S30):286–287.

† = lab postdoc; ‡ = lab grad student